Research workbench

Crystal structure of danio rerio HDAC6 znf-ubp domain

Analyse Crystal structure of danio rerio HDAC6 znf-ubp domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5G0F
Type: protein
Length: 112 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HDAC6
UniProt: F8W4B7
Ligands: ZN, NI

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	HDAC6	protein	112	24% helix, 16% strand	F8W4B7

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A
NI · Nickel (II) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5G0F · Crystal structure of Danio rerio HDAC6 ZnF-UBP domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F8W4B7
Elsewhere: RCSB PDB 5G0F · PDBe 5G0F · UniProt F8W4B7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.