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Crystal structure of a crenomytilus grayanus lectin in complex with GB3 allyl

Analyse Crystal structure of a crenomytilus grayanus lectin in complex with GB3 allyl in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5F90
Type: protein
Length: 299 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GALNAC/GAL-specific lectin
UniProt: H2FH31
Ligands: 5VQ, LMR, GAL, GLA, BGC

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GALNAC/GAL-specific lectin	protein	150	6% helix, 43% strand	H2FH31
B	GALNAC/GAL-specific lectin	protein	149	6% helix, 44% strand	H2FH31

Ligands and binding sites

5VQ · 2-Propen-1-ol · ligand · 3 copies
LMR · (2S)-2-hydroxybutanedioic acid · ligand · chains A
GAL · beta-D-galactopyranose · sugar · 5 copies · chains A, B
GLA · alpha-D-galactopyranose · sugar · 5 copies · chains A, B
BGC · beta-D-glucopyranose · sugar · 3 copies

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 743 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

5F90 · Crystal structure of a Crenomytilus grayanus lectin in complex with Gb3 allyl · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt H2FH31
Elsewhere: RCSB PDB 5F90 · PDBe 5F90 · UniProt H2FH31

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