Research workbench
Sequence matkdd inserted between GCN4 adaptors - structure T6
Analyse Sequence matkdd inserted between GCN4 adaptors - structure T6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5APW
- Type
- protein
- Length
- 195 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General control protein GCN4
- UniProt
- P03069
- Ligands
- URE, CA, CL
Structure
x-ray diffraction · 2 distinct chains · 92% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General control protein GCN4 | protein | 67 | 91% helix, 3% strand | P03069 |
| B, C | General control protein GCN4 | protein | 64 | 92% helix, 3% strand | P03069 |
Ligands and binding sites
- URE · Urea · ligand · chains A
- CA · Calcium ion · metal · chains B
- CL · Chloride ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- B–C · 1606 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 1430 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 1415 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5APW · Sequence MATKDD inserted between GCN4 adaptors - Structure T6 · the same entry in another collection · chain B against B, TM-score 1.00
- P03069 · AlphaFold monomer V2.0 prediction for general control transcription factor GCN4 (P03069) · a predicted model of the same protein · chain C against A, TM-score 0.50
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03069
- Elsewhere: RCSB PDB 5APW · PDBe 5APW · UniProt P03069
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