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Ligand · URE

URE · Urea

URE, Urea (C H4 N2 O, 60.1 g/mol), in the MolNFT structures on GenesisL1: bound in 39 records (27 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
URE
Formula
C H4 N2 O
Class
ligand
Structures
39
PDB entries
27

Binding sites

URE in 39 structures; the first of them:

  • 5I4X · Exploring onset of lysozyme denaturation by urea - soak period 2 hours · URE A201 · binds ALA10, ARG14, LEU129
  • 5I4Y · Exploring onset of lysozyme denaturation by urea: soak period 10 hours. · URE A201 · binds ALA10, LYS13, ARG14, LEU129
  • 5I53 · Exploring onset of lysozyme denaturation by urea - soak period 7 hours · URE A201 · binds ALA10, LYS13, ARG14, LEU129

Residues it binds most

LEU 75, ARG 69, THR 73, GLU 75, TYR 56, VAL 65, GLY 61, SER 57, PHE 46, ASP 42 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • NA · Sodium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • CA · Calcium ion
  • ACT · Acetate ion
  • NI · Nickel (II) ion
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • 8W4 · N-{(1S,2S)-1-[(2S)-4-benzyl-3-oxopiperazin-2-yl]-1-hydroxy-3-phenylpropan-2-yl}-7-ethyl-1,3,3-trimethyl-2,2-dioxo-1,2,3,4-tetrahydro-2lambda~6~-[1,2, 5]thiadiazepino[3,4,5-hi]indole-9-carboxamide
  • AG2 · Agmatine
  • CHT · Choline ion

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