Research workbench
Comparison of the structure and activity of glycosylated and aglycosylated human carboxylesterase 1
Analyse Comparison of the structure and activity of glycosylated and aglycosylated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5A7H
- Type
- protein
- Length
- 531 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Liver carboxylesterase 1
- EC
- 3.1.1.1, 3.1.1.56
- UniProt
- P23141
- Ligands
- IOD
- Pockets
- 3 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Liver carboxylesterase 1 (EC 3.1.1.1, 3.1.1.56) | protein | 531 | 37% helix, 17% strand | P23141 |
Ligands and binding sites
- IOD · Iodide ion · ion · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.79 | 0.95 | 28 | empty |
| 2 | 317 | 0.60 | 0.78 | 37 | empty |
| 3 | 50 | 0.31 | 0.77 | 13 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5A7H · Comparison of the structure and activity of glycosylated and aglycosylated Human… · the same entry in another collection · chain A against A, TM-score 1.00
- P23141 · AlphaFold monomer V2.0 prediction for liver carboxylesterase 1 (P23141) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23141
- Elsewhere: RCSB PDB 5A7H · PDBe 5A7H · UniProt P23141
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