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Crystal structure of aspergillus flavus fadgdh in complex with D- glucono-1,5-lactone

Analyse Crystal structure of aspergillus flavus fadgdh in complex with D… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4YNU
Type: protein
Length: 569 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glucose oxidase, putative
EC: 1.1.5.9
UniProt: B8MX95
Ligands: LGC, FAD
Pockets: 2 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glucose oxidase, putative (EC 1.1.5.9)	protein	569	33% helix, 22% strand	B8MX95

Ligands and binding sites

LGC · D-glucono-1,5-lactone · ligand · 2 copies · chains A
FAD · Flavin-adenine dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	600	0.83	0.88	70	FAD, LGC
2	72	0.37	0.77	18	empty

Compared structures

4YNU · Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B8MX95
Elsewhere: RCSB PDB 4YNU · PDBe 4YNU · UniProt B8MX95

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