Research workbench
Crystal structure of bacillus sp. GL1 xanthan lyase that acts on side chains of xanthan
Analyse Crystal structure of bacillus sp. GL1 xanthan lyase that acts on side chains of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1J0N
- Type
- protein
- Length
- 752 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xanthan lyase
- EC
- 4.2.2.12
- UniProt
- Q9AQS0
- Ligands
- CEG, CA
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xanthan lyase (EC 4.2.2.12) | protein | 752 | 31% helix, 28% strand | Q9AQS0 |
Ligands and binding sites
- CEG · 4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose · ligand · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1123 | 0.77 | 0.79 | 79 | CEG |
| 2 | 161 | 0.43 | 0.74 | 32 | empty |
| 3 | 103 | 0.37 | 0.75 | 18 | empty |
Compared structures
- 1J0N · Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan · the same entry in another collection · chain A against A, TM-score 1.00
- Q9AQS0 · AlphaFold monomer V2.0 prediction for xanthan lyase (Q9AQS0) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AQS0
- Elsewhere: RCSB PDB 1J0N · PDBe 1J0N · UniProt Q9AQS0
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