MolNFT v1 · #500687 · protein
AlphaFold monomer V2.0 prediction for xanthan lyase (Q9AQS0)
Q9AQS0: “AlphaFold monomer V2.0 prediction for xanthan lyase (Q9AQS0)”. 5 pockets (best druggability 0.77). MolNFT v1 #500687 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9AQS0
- Type
- protein
- Length
- 930 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- Xanthan lyase
- UniProt
- Q9AQS0
- Pockets
- 5 · best druggability 0.77
Structure
1 distinct chain · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xanthan lyase | protein | 930 | 26% helix, 30% strand | Q9AQS0 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1169 | 0.77 | 0.79 | 75 | empty |
| 2 | 230 | 0.46 | 0.73 | 31 | empty |
| 3 | 106 | 0.38 | 0.75 | 18 | empty |
| 4 | 121 | 0.37 | 0.74 | 24 | empty |
| 5 | 68 | 0.32 | 0.75 | 15 | empty |
Compared structures
- 1X1I · Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1X1I · Crystal structure of xanthan lyase (N194A) complexed with a product · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 2E22 · Crystal structure of xanthan lyase in complex with mannose · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 2E22 · Crystal structure of xanthan lyase in complex with mannose · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 2E24 · crystal structure of a mutant (R612A) of xanthan lyase · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 2E24 · Crystal structure of a mutant (R612A) of xanthan lyase · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1J0N · Crystal structure of bacillus sp. GL1 xanthan lyase that acts on side chains of xanthan · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1J0N · Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1J0M · Crystal structure of bacillus sp. GL1 xanthan lyase that acts on side chains of xanthan · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 1J0M · Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan · an experimental structure of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AQS0
- Elsewhere: UniProt Q9AQS0 · AlphaFold DB Q9AQS0
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