Research workbench
4'-phosphopantetheinyl transferase pptt from mycobacterium tuberculosis
Analyse 4'-phosphopantetheinyl transferase pptt from mycobacterium tuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4U89
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphopantetheinyl transferase pptt
- UniProt
- O33336
- Ligands
- COA, NA, PO4
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphopantetheinyl transferase pptt | protein | 225 | 33% helix, 28% strand | O33336 |
Ligands and binding sites
- COA · Coenzyme A · ligand · chains A
- NA · Sodium ion · metal · 11 copies · chains A
- PO4 · Phosphate ion · ion · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- IMD · Imidazole · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 332 | 0.62 | 0.78 | 45 | COA, NA |
Compared structures
- 4U89 · 4'-phosphopantetheinyl transferase PptT from Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00
- O33336 · AlphaFold monomer V2.0 prediction for 4'-phosphopantetheinyl transferase pptt (O33336) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O33336
- Elsewhere: RCSB PDB 4U89 · PDBe 4U89 · UniProt O33336
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