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Human farnesyl diphosphate synthase in complex with taxodione

Analyse Human farnesyl diphosphate synthase in complex with taxodione in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4P0X
Type: protein
Length: 330 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Farnesyl pyrophosphate synthase
EC: 2.5.1.10, 2.5.1.1
UniProt: P14324
Ligands: 1WO
Pockets: 1 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 74% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Farnesyl pyrophosphate synthase (EC 2.5.1.10, 2.5.1.1)	protein	330	74% helix, 1% strand	P14324

Ligands and binding sites

1WO · (5beta)-11-hydroxyabieta-7,9(11),13-triene-6,12-dione · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	999	0.77	0.79	82	1WO

Compared structures

4P0X · Human farnesyl diphosphate synthase in complex with Taxodione · the same entry in another collection · chain A against A, TM-score 1.00
P14324 · AlphaFold monomer V2.0 prediction for farnesyl pyrophosphate synthase (P14324) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P14324
Elsewhere: RCSB PDB 4P0X · PDBe 4P0X · UniProt P14324

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