Research workbench
Crystal structure of the peroxide form of the vanadium-containing chloroperoxidase from curvularia inaequalis
Analyse Crystal structure of the peroxide form of the vanadium-containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IDU
- Type
- protein
- Length
- 576 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vanadium chloroperoxidase
- EC
- 1.11.1.10
- UniProt
- P49053
- Ligands
- VO4
- Pockets
- 7 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vanadium chloroperoxidase (EC 1.11.1.10) | protein | 576 | 43% helix, 9% strand | P49053 |
Ligands and binding sites
- VO4 · Vanadate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1180 | 0.77 | 0.79 | 97 | VO4 |
| 2 | 65 | 0.50 | 0.85 | 21 | empty |
| 3 | 84 | 0.41 | 0.79 | 22 | empty |
| 4 | 115 | 0.40 | 0.75 | 28 | empty |
| 5 | 57 | 0.31 | 0.76 | 14 | empty |
Compared structures
- 1IDU · Crystal structure of the peroxide form of the vanadium-containing chloroperoxidase from… · the same entry in another collection · chain A against A, TM-score 1.00
- P49053 · AlphaFold monomer V2.0 prediction for vanadium chloroperoxidase (P49053) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49053
- Elsewhere: RCSB PDB 1IDU · PDBe 1IDU · UniProt P49053
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