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Ligand · VO4

VO4 · Vanadate ion

VO4, Vanadate ion (O4 V -3, 114.9 g/mol), in the MolNFT structures on GenesisL1: bound in 36 records (31 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VO4
Formula
O4 V -3
Class
ion
Structures
36
PDB entries
31

Binding sites

VO4 in 36 structures; the first of them:

  • 5HMP · Myosin Vc pre-powerstroke state · VO4 A802 · binds SER163, GLY164, LYS167, ASN212, SER215, SER216, TYR437, GLY438
  • 6DT6 · Crystal Structure of the YopH PTP1B Chimera 3 PTPase bound to vanadate · VO4 A501 · binds CYS403, ARG404, ALA405, GLY406, VAL407, GLY408, ARG409, GLN446 and 1 more
  • 6I7E · Plasmodium falciparum Myosin A, Pre-powerstroke · VO4 A803 · binds SER193, GLY194, LYS197, THR198, ASN242, SER245, SER246, ARG247 and 3 more
  • 6NPZ · Crystal structure of Akt1 (aa 123-480) kinase with a bisubstrate · VO4 B502
  • 6PM8 · Protein Tyrosine Phosphatase 1B (1-301), P180A mutant, vanadate bound state · VO4 A301 · binds ASP181, CYS215, SER216, ALA217, GLY218, ILE219, GLY220, ARG221 and 1 more
  • 7OU0 · The structure of MutS bound to two molecules of ADP-Vanadate · VO4 A901 · binds PRO615, ASN616, MET617, LYS620, SER621, HIS728, SER668, THR669 and 2 more
  • 7QWI · Vanadate complex of the vanadium-dependent bromoperoxidase from Corallina pilulifera · VO4 AAA601 · binds LYS400, ARG408, PRO478, HIS480, SER485, GLY486, HIS487, ARG547 and 1 more
  • 7ZNU · cryo-EM structure of CGT ABC transporter in detergent micelle · VO4 A602 · binds THR370, GLY371, LYS374, THR375, GLN416, GLU497, HIS528, GLY475 and 1 more
  • 8PMJ · Vanadate-trapped BSEP in nanodiscs · VO4 A1507 · binds SER560, GLY561, GLY562, GLN563, ALA588, LEU589, SER1114, SER1115 and 6 more
  • 5N69 · Cardiac muscle myosin S1 fragment in the pre-powerstroke state co- crystallized with the… · VO4 A902 · binds SER180, GLY181, LYS184, ASN238, SER241, SER242, ARG243, ALA463 and 1 more
  • 5OFR · Structure of the antibacterial peptide ABC transporter mcjd in a high energy outward… · VO4 A603 · binds SER380, LYS384, SER385, GLN426, ASP505, GLU506, HIS537, SER482 and 3 more
  • 6DR7 · Yoph PTP1B wpd loop chimera 2 ptpase bound to vanadate · VO4 A502 · binds CYS403, ARG404, ALA405, GLY406, VAL407, GLY408, ARG409, GLN446
  • 6DT6 · Crystal structure of the yoph PTP1B chimera 3 ptpase bound to vanadate · VO4 A501 · binds CYS403, ARG404, ALA405, GLY406, VAL407, GLY408, ARG409, GLN446 and 1 more
  • 6I7E · Plasmodium falciparum myosin a, pre-powerstroke · VO4 A803 · binds SER193, GLY194, LYS197, THR198, ASN242, SER245, SER246, ARG247 and 3 more
  • 6LVQ · Crystal structure of DUSP22_VO4 · VO4 A201 · binds ASP57, CYS88, LEU89, ALA90, GLY91, VAL92, SER93, ARG94
  • 6NPZ · Crystal structure of AKT1 (aa 123-480) kinase with a bisubstrate · VO4 B502
  • 6PG0 · Protein tyrosine phosphatase 1B (1-301), P188A mutant, vanadate bound state · VO4 A301 · binds ASP181, PHE182, CYS215, SER216, ALA217, GLY218, ILE219, GLY220 and 2 more
  • 6PGT · Protein tyrosine phosphatase 1B (1-301), T177A mutant, vanadate bound state · VO4 A301 · binds ASP181, CYS215, SER216, ALA217, GLY218, ILE219, GLY220, ARG221 and 1 more
  • 6PHA · Protein tyrosine phosphatase 1B (1-301), F182A mutant, vanadate bound state · VO4 A301 · binds ASP181, CYS215, SER216, ALA217, GLY218, ILE219, GLY220, ARG221 and 1 more
  • 6PHS · Protein tyrosine phosphatase 1B (1-301), P185A mutant, vanadate bound state · VO4 A301 · binds ASP181, PHE182, CYS215, SER216, ALA217, GLY218, ILE219, GLY220 and 2 more
  • 6PM8 · Protein tyrosine phosphatase 1B (1-301), P180A mutant, vanadate bound state · VO4 A301 · binds ASP181, CYS215, SER216, ALA217, GLY218, ILE219, GLY220, ARG221 and 1 more
  • 6S3N · Crystal structure of helicase PIF1 from thermus oshimai in complex with ssdna (DT)18 and… · VO4 A1003 · binds PRO92, ALA93, GLY94, LYS97, GLU172, GLN212, ARG256, GLN435 and 2 more
  • 6VQT · Structure of a bacterial ATM1-family ABC exporter with MGADPVO4 bound · VO4 A702 · binds LYS400, SER401, GLN442, GLU523, HIS554, SER499, GLY500, GLY501 and 1 more
  • 6XEA · Crystal structure of the PTP1B yoph wpd loop chimera 3 bound to vanadate · VO4 A401 · binds ASP181, GLN182, CYS215, SER216, ALA217, GLY218, ILE219, GLY220 and 1 more
  • 6XEF · Crystal structure of the PTP1B yoph wpd loop chimera 4 bound to vanadate · VO4 A404 · binds ASP181, GLN182, CYS215, SER216, ALA217, GLY218, ILE219, GLY220 and 2 more
  • 6YCX · Plasmodium falciparum myosin a full-length, pre-powerstroke state · VO4 A902 · binds GLU192, SER193, GLY194, LYS197, ASN242, SER245, SER246, PHE471 and 2 more
  • 6YSY · Skeletal myosin bound to mph-220, mgadp-VO4 · VO4 A2002 · binds GLU180, SER181, GLY182, LYS185, ASN241, SER244, SER245, ARG246 and 2 more
  • 7BCW · Structure of msba in salipro with ADP vanadate · VO4 A601 · binds ARG377, SER378, GLY379, LYS382, SER383, GLN424, HIS537, SER482 and 3 more

Residues it binds most

GLY 50, SER 41, ARG 29, GLN 28, ALA 32, LYS 32, HIS 24, ASP 18, GLU 15, CYS 16 (residue and the binding sites it lines).

Found with

  • ADP · Adenosine-5'-diphosphate
  • MG · Magnesium ion
  • GOL · Glycerol
  • EDO · 1,2-ethanediol
  • PGE · Triethylene glycol
  • BEN · Benzamidine
  • MN · Manganese (II) ion
  • ACT · Acetate ion
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol
  • 2OW · Methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl) carbamoyl]amino}benzyl)piperazine-1-carboxylate
  • ATP · Adenosine-5'-triphosphate
  • CLR · Cholesterol

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