Ligand · SPM
SPM · Spermine
SPM, Spermine (C10 H26 N4, 202.3 g/mol), in the MolNFT structures on GenesisL1: bound in 109 records (94 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- SPM
- Formula
- C10 H26 N4
- Class
- ligand
- Structures
- 109
- PDB entries
- 94
Binding sites
SPM in 109 structures; the first of them:
- 5VJB · Guanidine-II riboswitch P2 hairpin dimer with 5-bromoU substitution from Pseudomonas… · SPM A102 · binds G5, G6, A7, C8, G9, A10, C11, C12
- 5XJZ · Structure of DNA1-Ag complex · SPM B101 · binds DG1, DC2, DG5, DC6
- 6E1X · Crystal structure of product-bound complex of spermidine/spermine N-acetyltransferase SpeG · SPM A201 · binds ASN22, MET28, TRP31, GLU33, GLU34, TYR36, GLU37, GLU41
- 6GAW · Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.… · SPM BA3205 · binds G295, C296, A297, U687, A688, A689, C763, A764 and 2 more
- 6GAZ · Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.… · SPM AA3001 · binds U299, G300, U301, U397, G398, A399, C400, A462 and 1 more
- 6HIW · Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains… · SPM CA740 · binds GLN297, THR127, U66, U67, U95, U96, U97, U125 and 4 more
- 6HIY · Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains… · SPM CA735 · binds GLN297, LYS424, THR127, U66, U67, U95, U96, U97 and 5 more
- 6RSJ · Cytochrome c co-crystallized with 20 eq. sulfonato-calix[8]arene and soaked with 25 eq.… · SPM A205
- 6RSK · Cytochrome c co-crystallized with 20 eq. sulfonato-calix[8]arene and 15 eq. spermine… · SPM A211 · binds ALA-1
- 6RW5 · Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 · SPM A1702 · binds U944, G945, U946, U1044, G1045, A1046, A1047, C1048 and 2 more
- 6XT7 · Tel25 Hybrid Four-quartet G-quadruplex with K+ · SPM B1106 · binds DT1003, DG1004, DT1021, DG1022
- 6YEC · E.coli's Putrescine receptor PotF complexed with Spermine · SPM B501 · binds TRP37, SER38, ASP39, TYR40, ASN65, SER85, SER87, PHE88 and 8 more
- 6YWE · The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state · SPM A3636 · binds U1249, U1250, C1251, A1270, A1271, C1382, G1383, G1384 and 4 more
- 6YWV · The structure of the Atp25 bound assembly intermediate of the mitoribosome from… · SPM A3644 · binds U1249, U1250, C1251, A1270, A1271, C1382, G1383, G1384 and 5 more
- 6YWY · The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site · SPM A3645 · binds U1249, A1270, A1271, C1382, G1383, G1384, U1392, ARG22 and 1 more
- 7D5E · Left-handed G-quadruplex containing two bulges · SPM A104 · binds DG17, DG20, DT22, DG23, DG26
- 7EDT · RNA duplex containing CC mispairs · SPM A401 · binds C4
- 7FJQ · Cryo EM structure of lysosomal ATPase · SPM A1201 · binds TRP251, ASP254, HIS255, TYR259, ASP463, THR466, VAL467, TYR940 and 4 more
- 7K00 · Structure of the Bacterial Ribosome at 2 Angstrom Resolution · SPM a6223 · binds A693, U694, G695, G696, G697, C698, U762, G763 and 7 more
- 7L0Z · Spinach variant bound to DFHBI-1T · SPM G102 · binds G16, U17, G20, G21, U22, U42
Residues it binds most
G 217, C 175, A 172, U 160, GLU 83, TYR 106, ASP 75, ARG 90, LEU 47, GLN 49 (residue and the binding sites it lines).
Found with
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