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Crystal Structure of the Human BRDG1/STAP-1 SH2 Domain in Complex with the NTAL pTyr136 Peptide

Analyse Crystal Structure of the Human BRDG1/STAP-1 SH2 Domain in Complex with the NTAL… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3MAZ
Type
protein
Length
109 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.9
Source
Homo sapiens; SYNTHETIC CONSTRUCT
Molecule
Signal-transducing adaptor protein 1; CheD family protein
UniProt
Q9ULZ2, Q9GZY6

Structure

x-ray diffraction · resolution 1.9 · 2 distinct chains · 22% helix, 28% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASignal-transducing adaptor protein 1protein9924% helix, 31% strandQ9ULZ2
BCheD family proteinprotein100% helix, 0% strandQ9GZY6

Ligands and binding sites

  • MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 783 Ų buried · 15 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 3MAZ · Crystal structure of the human BRDG1/STAP-1 SH2 domain in complex with the ntal PTYR136… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9ULZ2 · AlphaFold monomer V2.0 prediction for signal-transducing adaptor protein 1 (Q9ULZ2) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • Q9GZY6 · AlphaFold monomer V2.0 prediction for linker for activation of T-cells family member 2… · a predicted model of the same protein · chain B against A, TM-score 0.34

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