Research workbench
Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) in E. coli polar lipids
Analyse Electron crystallographic structure of lens Aquaporin-0 (AQP0) (lens MIP) in E.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3M9I
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- electron crystallography
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Ovis aries
- Molecule
- Lens fiber major intrinsic protein
- UniProt
- Q6J8I9
- Ligands
- 3PE
- Pockets
- 2 · best druggability 0.42
Structure
electron crystallography · resolution 2.5 · 1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lens fiber major intrinsic protein | protein | 220 | 67% helix, 0% strand | Q6J8I9 |
Ligands and binding sites
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.42 | 0.77 | 22 | empty |
| 2 | 104 | 0.36 | 0.74 | 25 | empty |
Compared structures
- 3M9I · Electron crystallographic structure of lens aquaporin-0 (AQP0) (lens mip) in E. COLI… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6J8I9 · AlphaFold monomer V2.0 prediction for lens fiber major intrinsic protein (Q6J8I9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6J8I9
- Elsewhere: RCSB PDB 3M9I · PDBe 3M9I · UniProt Q6J8I9
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