Research workbench
Crystal Structure of Spin Labeled T4 Lysozyme Mutant 115-119RX
Analyse Crystal Structure of Spin Labeled T4 Lysozyme Mutant 115-119RX in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3L2X
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Enterobacteria phage T4
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00720
- Ligands
- RXR, CL, AZI
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · resolution 1.8 · 1 distinct chain · 64% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 164 | 64% helix, 8% strand | P00720 |
Ligands and binding sites
- RXR · [2,2,5,5-tetramethyl-3,4-bis(sulfanylmethyl)-2,5-dihydro-1H-pyrrol-1-yl]oxidanyl radical · ligand · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- AZI · Azide ion · ion · chains A
- HED · 2-hydroxyethyl disulfide · additive · chains A
- BME · Beta-mercaptoethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.52 | 0.76 | 31 | CL |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 3L2X · Crystal structure of spin labeled T4 lysozyme mutant 115-119RX · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00720
- Elsewhere: RCSB PDB 3L2X · PDBe 3L2X · UniProt P00720
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