Research workbench
DNA-binding domain from Saccharomyces cerevisiae chromatin- remodelling protein Chd1
Analyse DNA-binding domain from Saccharomyces cerevisiae chromatin- remodelling protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 2XB0
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- SACCHAROMYCES CEREVISIAE
- Molecule
- Chromo domain-containing protein 1
- EC
- 3.6.1.-
- UniProt
- P32657
- Ligands
- CL
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · resolution 2 · 1 distinct chain · 59% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Chromo domain-containing protein 1 (EC 3.6.1.-) | protein | 233 | 59% helix, 2% strand | P32657 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.42 | 0.76 | 19 | empty |
| 2 | 57 | 0.29 | 0.75 | 13 | empty |
Compared structures
- 2XB0 · DNA-binding domain from saccharomyces cerevisiae chromatin- remodelling protein CHD1 · the same entry in another collection · chain X against X, TM-score 1.00
- P32657 · AlphaFold monomer V2.0 prediction for chromo domain-containing protein 1 (P32657) · a predicted model of the same protein · chain X against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32657
- Elsewhere: RCSB PDB 2XB0 · PDBe 2XB0 · UniProt P32657
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