Research workbench
Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 86
Analyse Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 86 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8BCG
- Type
- protein
- Length
- 1,985 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.39
- Source
- Homo sapiens
- Molecule
- U5 small nuclear ribonucleoprotein 200 kDa helicase; Pre-mRNA-processing-splicing factor 8
- EC
- 3.6.4.13
- UniProt
- O75643, Q6P2Q9
- Ligands
- Q9I
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · resolution 2.39 · 2 distinct chains · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | U5 small nuclear ribonucleoprotein 200 kDa helicase (EC 3.6.4.13) | protein | 1725 | 45% helix, 18% strand | O75643 |
| J | Pre-mRNA-processing-splicing factor 8 | protein | 260 | 26% helix, 26% strand | Q6P2Q9 |
Ligands and binding sites
- Q9I · 4-chloranyl-~{N}-methoxy-~{N}-methyl-benzenesulfonamide · ligand · chains B
- EDO · 1,2-ethanediol · additive · 9 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1111 | 0.85 | 0.86 | 95 | empty |
| 2 | 968 | 0.82 | 0.84 | 100 | EDO |
| 3 | 870 | 0.79 | 0.82 | 71 | Q9I |
| 4 | 1034 | 0.77 | 0.79 | 81 | EDO |
| 5 | 748 | 0.74 | 0.79 | 46 | EDO |
Interfaces
1 interface between chains.
- B–J · 1845 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- O75643 · AlphaFold monomer V2.0 prediction for U5 small nuclear ribonucleoprotein 200 kda helicase… · a predicted model of the same protein · chain B against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75643
- Every structure of UniProt Q6P2Q9
- Elsewhere: RCSB PDB 8BCG · PDBe 8BCG · UniProt O75643 · UniProt Q6P2Q9
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