Research workbench
Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound to 100% GDP and 2 Na+
Analyse Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EVE
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Odinarchaeota archaeon (strain LCB_4)
- Molecule
- Tubulin-like protein
- UniProt
- A0A1Q9N9N5
- Ligands
- GDP, NA
- Pockets
- 5 · best druggability 0.57
Structure
x-ray diffraction · resolution 2 · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Tubulin-like protein | protein | 423 | 45% helix, 18% strand | A0A1Q9N9N5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.57 | 0.80 | 30 | GDP, NA |
| 2 | 120 | 0.51 | 0.81 | 20 | empty |
| 3 | 52 | 0.40 | 0.81 | 18 | empty |
| 4 | 69 | 0.37 | 0.77 | 14 | empty |
| 5 | 71 | 0.30 | 0.74 | 19 | empty |
Compared structures
- 7EVE · Odinarchaeota tubulin (odintubulin) H393D mutant, in a protofilament arrangement, bound… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q9N9N5
- Elsewhere: RCSB PDB 7EVE · PDBe 7EVE · UniProt A0A1Q9N9N5
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