MolNFT v1 · #177833 · protein
Odinarchaeota tubulin (odintubulin) H393D mutant, in a protofilament arrangement, bound to 100% GDP and 2 na+
7EVE · Tubulin-like protein: “Odinarchaeota tubulin (odintubulin) H393D mutant, in a protofilament arrangement, bound to 100% GDP and 2 na+”. X-ray diffraction, 2 ligands (GDP, NA), 5 pockets (best druggability 0.57). MolNFT v1 #177833 on…
- PDB
- 7EVE
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tubulin-like protein
- UniProt
- A0A1Q9N9N5
- Ligands
- GDP, NA
- Pockets
- 5 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Tubulin-like protein | protein | 423 | 45% helix, 18% strand | A0A1Q9N9N5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.57 | 0.80 | 30 | GDP, NA |
| 2 | 120 | 0.51 | 0.81 | 20 | empty |
| 3 | 52 | 0.40 | 0.81 | 18 | empty |
| 4 | 69 | 0.37 | 0.77 | 14 | empty |
| 5 | 71 | 0.30 | 0.74 | 19 | empty |
Compared structures
- 7EVE · Odinarchaeota tubulin (OdinTubulin) H393D mutant, in a protofilament arrangement, bound… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q9N9N5
- Elsewhere: RCSB PDB 7EVE · PDBe 7EVE · UniProt A0A1Q9N9N5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.