Research workbench
Structure of PfGrx1 in the intermediate state with platinum and cesium
Analyse Structure of PfGrx1 in the intermediate state with platinum and cesium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7DIU
- Type
- protein
- Length
- 106 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.879
- Source
- Plasmodium falciparum (isolate 3D7)
- Molecule
- Glutaredoxin
- EC
- 1.8.4.2
- UniProt
- Q9NLB2
- Ligands
- CS, PT
Structure
x-ray diffraction · resolution 1.879 · 1 distinct chain · 54% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutaredoxin (EC 1.8.4.2) | protein | 106 | 54% helix, 17% strand | Q9NLB2 |
Ligands and binding sites
- CS · Cesium ion · metal · 3 copies · chains A
- PT · Platinum (II) ion · metal · chains A
- MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7DIU · Structure of PFGRX1 in the intermediate state with platinum and cesium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NLB2
- Elsewhere: RCSB PDB 7DIU · PDBe 7DIU · UniProt Q9NLB2
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