Research workbench
Ancestral L-amino acid oxidase (AncLAAO-N5) ligand free form
Analyse Ancestral L-amino acid oxidase (AncLAAO-N5) ligand free form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7C4K
- Type
- protein
- Length
- 614 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Molecule
- Ancestral L-amino acid oxidase
- Ligands
- FAD
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · resolution 2.4 · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ancestral L-amino acid oxidase | protein | 614 | 42% helix, 21% strand | — |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1139 | 0.86 | 0.87 | 124 | FAD |
| 2 | 125 | 0.77 | 0.95 | 21 | empty |
| 3 | 254 | 0.57 | 0.78 | 29 | empty |
| 4 | 112 | 0.46 | 0.78 | 20 | empty |
Compared structures
- 7C4K · Ancestral L-amino acid oxidase (anclaao-N5) ligand free form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7C4K · PDBe 7C4K
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