MolNFT v1 · #174726 · protein

Ancestral L-amino acid oxidase (anclaao-N5) ligand free form

7C4K: “Ancestral L-amino acid oxidase (anclaao-N5) ligand free form”. X-ray diffraction, 1 ligand (FAD), 4 pockets (best druggability 0.86). MolNFT v1 #174726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7C4K
Type: protein
Length: 614 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ancestral L-amino acid oxidase
Ligands: FAD
Pockets: 4 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ancestral L-amino acid oxidase	protein	614	42% helix, 21% strand	—

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1139	0.86	0.87	124	FAD
2	125	0.77	0.95	21	empty
3	254	0.57	0.78	29	empty
4	112	0.46	0.78	20	empty

Compared structures

7C4K · Ancestral L-amino acid oxidase (AncLAAO-N5) ligand free form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7C4K · PDBe 7C4K

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