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Reduced phosphoribulokinase from Synechococcus elongatus PCC 7942 complexed with adenosine diphosphate and glucose 6-phosphate

Analyse Reduced phosphoribulokinase from Synechococcus elongatus PCC 7942 complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KEV
Type: protein
Length: 317 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.50614
Source: Synechococcus elongatus (strain PCC 7942)
Molecule: Phosphoribulokinase
EC: 2.7.1.19
UniProt: Q31PL2
Ligands: ADP, G6P
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · resolution 2.50614 · 1 distinct chain · 35% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoribulokinase (EC 2.7.1.19)	protein	317	35% helix, 26% strand	Q31PL2

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
G6P · 6-O-phosphono-alpha-D-glucopyranose · sugar · chains A
DTT · 2,3-dihydroxy-1,4-dithiobutane · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.49	0.83	20	ADP
2	144	0.44	0.75	32	G6P

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6KEV · Reduced phosphoribulokinase from synechococcus elongatus pcc 7942 complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt Q31PL2
Elsewhere: RCSB PDB 6KEV · PDBe 6KEV · UniProt Q31PL2

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