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Crystal Structure of N-terminal domain of ArgZ, C264S mutant, bound to Substrate, an arginine dihydrolase from the Ornithine-Ammonia Cycle in Cyanobacteria

Analyse Crystal Structure of N-terminal domain of ArgZ, C264S mutant, bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JV1
Type: protein
Length: 271 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.2
Source: Synechocystis sp. (strain PCC 6803 / Kazusa)
Molecule: Sll1336 protein
UniProt: P74535
Ligands: ARG
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · resolution 1.2 · 1 distinct chain · 35% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sll1336 protein	protein	271	35% helix, 21% strand	P74535

Ligands and binding sites

ARG · Arginine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.75	0.97	25	empty

Compared structures

6JV1 · Crystal structure of N-terminal domain of argz, C264S mutant, bound to substrate, an… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P74535
Elsewhere: RCSB PDB 6JV1 · PDBe 6JV1 · UniProt P74535

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