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Crystal structure of Leuconostoc citreum NRRL B-1299 N-terminally truncated dextransucrase DSR-M in complex with isomaltotetraose
Analyse Crystal structure of Leuconostoc citreum NRRL B-1299 N-terminally truncated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HTV
- Type
- protein
- Length
- 1,064 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.9
- Source
- Leuconostoc citreum
- Molecule
- Alternansucrase
- EC
- 2.4.1.140
- UniProt
- A0A2H4A2Q1
- Ligands
- GLC, CA
- Pockets
- 11 · best druggability 0.71
Structure
x-ray diffraction · resolution 3.9 · 1 distinct chain · 25% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alternansucrase (EC 2.4.1.140) | protein | 1064 | 25% helix, 21% strand | A0A2H4A2Q1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 750 | 0.71 | 0.77 | 63 | empty |
| 2 | 121 | 0.70 | 0.92 | 24 | empty |
| 3 | 594 | 0.70 | 0.78 | 59 | GLC |
| 4 | 56 | 0.61 | 0.93 | 23 | empty |
| 5 | 103 | 0.47 | 0.80 | 20 | empty |
Compared structures
- 6HTV · Crystal structure of leuconostoc citreum nrrl B-1299 N-terminally truncated… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2H4A2Q1
- Elsewhere: RCSB PDB 6HTV · PDBe 6HTV · UniProt A0A2H4A2Q1
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