MolNFT v1 · #151640 · protein

Crystal structure of leuconostoc citreum nrrl B-1299 N-terminally truncated dextransucrase dsr-M in complex with isomaltotetraose

6HTV · Alternansucrase: “Crystal structure of leuconostoc citreum nrrl B-1299 N-terminally truncated dextransucrase dsr-M in complex…”. X-ray diffraction, 2 ligands (GLC, CA), 11 pockets (best druggability 0.71). MolNFT v1 #151640 on…

PDB: 6HTV
Type: protein
Length: 1,064 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alternansucrase
EC: 2.4.1.140
UniProt: A0A2H4A2Q1
Ligands: GLC, CA
Pockets: 11 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alternansucrase (EC 2.4.1.140)	protein	1064	25% helix, 21% strand	A0A2H4A2Q1

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	750	0.71	0.77	63	empty
2	121	0.70	0.92	24	empty
3	594	0.70	0.78	59	GLC
4	56	0.61	0.93	23	empty
5	103	0.47	0.80	20	empty

Compared structures

6HTV · Crystal structure of Leuconostoc citreum NRRL B-1299 N-terminally truncated… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2H4A2Q1
Elsewhere: RCSB PDB 6HTV · PDBe 6HTV · UniProt A0A2H4A2Q1

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