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Structure of the R18A/E28A mutant of the HIV-1 capsid protein

Analyse Structure of the R18A/E28A mutant of the HIV-1 capsid protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5W4Q
Type
protein
Length
218 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.285
Source
Human immunodeficiency virus 1
Molecule
Capsid protein p24
UniProt
B6DRA0
Ligands
IOD, CL

Structure

x-ray diffraction · resolution 2.285 · 1 distinct chain · 61% helix, 1% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACapsid protein p24protein21861% helix, 1% strandB6DRA0

Ligands and binding sites

  • IOD · Iodide ion · ion · 7 copies · chains A
  • CL · Chloride ion · ion · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

  • 5W4Q · Structure of the R18A/E28A mutant of the HIV-1 capsid protein · the same entry in another collection · chain A against A, TM-score 1.00

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