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S. aureus FtsZ 12-316 F138A GTP Closed form (3FCm)

Analyse S. aureus FtsZ 12-316 F138A GTP Closed form (3FCm) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MN7
Type: protein
Length: 606 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.3
Source: Staphylococcus aureus
Molecule: Cell division protein FtsZ
UniProt: P0A031
Ligands: GTP, MG
Pockets: 4 · best druggability 0.35

Structure

x-ray diffraction · resolution 3.3 · 1 distinct chain · 44% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Cell division protein FtsZ	protein	303	44% helix, 23% strand	P0A031

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.35	0.74	31	MG, GTP
2	57	0.31	0.77	15	empty
3	78	0.31	0.74	26	MG, GTP
4	51	0.29	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 1115 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

5MN7 · S. aureus ftsz 12-316 F138A GTP closed form (3FCM) · the same entry in another collection · chain A against A, TM-score 1.00
P0A031 · AlphaFold monomer V2.0 prediction for cell division protein ftsz (P0A031) · a predicted model of the same protein · chain B against A, TM-score 0.54

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A031
Elsewhere: RCSB PDB 5MN7 · PDBe 5MN7 · UniProt P0A031

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