Research workbench
The third PDZ domain from the synaptic protein PSD-95 in complex with a mutant C-terminal peptide derived from CRIPT (T-2F)
Analyse The third PDZ domain from the synaptic protein PSD-95 in complex with a mutant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HED
- Type
- protein
- Length
- 126 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Rattus norvegicus; SYNTHETIC CONSTRUCT
- Molecule
- Disks large homolog 4; Cysteine-rich PDZ-binding protein
- UniProt
- P31016, Q792Q4
Structure
x-ray diffraction · resolution 1.7 · 2 distinct chains · 17% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Disks large homolog 4 | protein | 118 | 19% helix, 32% strand | P31016 |
| B | Cysteine-rich PDZ-binding protein | protein | 8 | 0% helix, 50% strand | Q792Q4 |
Interfaces
1 interface between chains.
- A–B · 585 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 5HED · The third PDZ domain from the synaptic protein psd-95 in complex with a mutant C-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
- P31016 · AlphaFold monomer V2.0 prediction for disks large homolog 4 (P31016) · a predicted model of the same protein · chain A against A, TM-score 0.81
- Q792Q4 · AlphaFold monomer V2.0 prediction for cysteine-rich PDZ-binding protein (Q792Q4) · a predicted model of the same protein · chain B against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31016
- Every structure of UniProt Q792Q4
- Elsewhere: RCSB PDB 5HED · PDBe 5HED · UniProt P31016 · UniProt Q792Q4
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