Research workbench
AlphaFold monomer V2.0 prediction for acid-activated urea channel (P56874)
Analyse AlphaFold monomer V2.0 prediction for acid-activated urea channel (P56874) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P56874
- Type
- protein
- Length
- 195 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xe8A815f214BD91816A95FA8f72fe02a140345800
- Molecule
- Acid-activated urea channel
- UniProt
- P56874
- Pockets
- 2 · best druggability 0.71
Structure
1 distinct chain · 77% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acid-activated urea channel | protein | 195 | 77% helix, 2% strand | P56874 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.71 | 0.82 | 34 | empty |
| 2 | 352 | 0.69 | 0.82 | 29 | empty |
Compared structures
- 6NSK · CryoEM structure of Helicobacter pylori urea channel in open state. · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 6NSK · Cryoem structure of helicobacter pylori urea channel in open state. · an experimental structure of the same protein · chain A against A, TM-score 0.91
- 6NSJ · CryoEM structure of Helicobacter pylori urea channel in closed state · an experimental structure of the same protein · chain A against C, TM-score 0.88
- 6NSJ · Cryoem structure of helicobacter pylori urea channel in closed state · an experimental structure of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56874
- Elsewhere: UniProt P56874 · AlphaFold DB P56874
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