Research workbench
AlphaFold monomer V2.0 prediction for DNA replication complex gins protein SLD5 (Q9BRT9)
Analyse AlphaFold monomer V2.0 prediction for DNA replication complex gins protein SLD5… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9BRT9
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB797235589280D92Ce4bA47be78Fa8180f655a40
- Molecule
- DNA replication complex gins protein SLD5
- UniProt
- Q9BRT9
- Pockets
- 2 · best druggability 0.51
Structure
1 distinct chain · 53% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA replication complex gins protein SLD5 | protein | 223 | 53% helix, 11% strand | Q9BRT9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.51 | 0.78 | 30 | empty |
| 2 | 57 | 0.31 | 0.76 | 13 | empty |
Compared structures
- 7PFO · Core human replisome · an experimental structure of the same protein · chain A against G, TM-score 0.88
- 7PLO · H. sapiens replisome-CUL2/LRR1 complex · an experimental structure of the same protein · chain A against G, TM-score 0.88
- 8OK2 · Bipartite interaction of TOPBP1 with the GINS complex · an experimental structure of the same protein · chain A against D, TM-score 0.87
- 6XTX · CryoEM structure of human CMG bound to ATPgammaS and DNA · an experimental structure of the same protein · chain A against D, TM-score 0.86
- 6XTX · Cryoem structure of human cmg bound to atpgammas and DNA · an experimental structure of the same protein · chain A against D, TM-score 0.86
- 6XTY · Cryoem structure of human cmg bound to and-1 (cmga) · an experimental structure of the same protein · chain A against D, TM-score 0.86
- 2Q9Q · The crystal structure of full length human gins complex · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 2Q9Q · The crystal structure of full length human GINS complex · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 2E9X · The crystal structure of human gins core complex · an experimental structure of the same protein · chain A against D, TM-score 0.86
- 2E9X · The crystal structure of human GINS core complex · an experimental structure of the same protein · chain A against D, TM-score 0.86
- 8B9D · Human replisome bound by Pol Alpha · an experimental structure of the same protein · chain A against G, TM-score 0.85
- 2EHO · Crystal structure of human GINS complex · an experimental structure of the same protein · chain A against I, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BRT9
- Elsewhere: UniProt Q9BRT9 · AlphaFold DB Q9BRT9
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