Research workbench
AlphaFold monomer V2.0 prediction for small RNA degrading nuclease 1 (A3KPE8)
Analyse AlphaFold monomer V2.0 prediction for small RNA degrading nuclease 1 (A3KPE8) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A3KPE8
- Type
- protein
- Length
- 409 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7012c0b45c68a2c067644b9d3e5DDa06892c6957
- Molecule
- Small RNA degrading nuclease 1
- UniProt
- A3KPE8
- Pockets
- 4 · best druggability 0.53
Structure
1 distinct chain · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small RNA degrading nuclease 1 | protein | 409 | 41% helix, 21% strand | A3KPE8 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.53 | 0.76 | 20 | empty |
| 2 | 188 | 0.53 | 0.78 | 21 | empty |
| 3 | 190 | 0.50 | 0.77 | 23 | empty |
| 4 | 56 | 0.31 | 0.76 | 17 | empty |
Compared structures
- 5Z9X · Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate · an experimental structure of the same protein · chain A against A, TM-score 0.69
- 5Z9X · Arabidopsis small RNA degrading nuclease 1 in complex with an RNA substrate · an experimental structure of the same protein · chain A against A, TM-score 0.69
- 5Z9Z · The C-terminal rrm domain of arabidopsis small RNA degrading nuclease 1… · an experimental structure of the same protein · chain A against A, TM-score 0.24
- 5Z9Z · The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1… · an experimental structure of the same protein · chain A against A, TM-score 0.24
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3KPE8
- Elsewhere: UniProt A3KPE8 · AlphaFold DB A3KPE8
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