MolNFT v1 · #141514 · protein
The C-terminal rrm domain of arabidopsis small RNA degrading nuclease 1 (E329A/E330A/E332A)
5Z9Z: “The C-terminal rrm domain of arabidopsis small RNA degrading nuclease 1 (E329A/E330A/E332A)”. X-ray diffraction. MolNFT v1 #141514 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Z9Z
- Type
- protein
- Length
- 101 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Small RNA degrading nuclease 1
- EC
- 3.1.-.-
- UniProt
- A3KPE8
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small RNA degrading nuclease 1 (EC 3.1.-.-) | protein | 101 | 22% helix, 41% strand | A3KPE8 |
Ligands and binding sites
- FLC · Citrate anion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5Z9Z · The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1… · the same entry in another collection · chain A against A, TM-score 1.00
- A3KPE8 · AlphaFold monomer V2.0 prediction for small RNA degrading nuclease 1 (A3KPE8) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3KPE8
- Elsewhere: RCSB PDB 5Z9Z · PDBe 5Z9Z · UniProt A3KPE8
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