Research workbench
AlphaFold monomer V2.0 prediction for ribosomal RNA-processing protein 1 (P35178)
Analyse AlphaFold monomer V2.0 prediction for ribosomal RNA-processing protein 1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P35178
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xcf977Dc0CD62329D4750FCa1152B6633Bf4D477b
- Molecule
- Ribosomal RNA-processing protein 1
- UniProt
- P35178
- Pockets
- 2 · best druggability 0.48
Structure
1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA-processing protein 1 | protein | 278 | 67% helix, 0% strand | P35178 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.48 | 0.81 | 17 | empty |
| 2 | 69 | 0.28 | 0.73 | 15 | empty |
Compared structures
- 8V83 · 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map) · an experimental structure of the same protein · chain A against w, TM-score 0.87
- 6C0F · Yeast nucleolar pre-60S ribosomal subunit (state 2) · an experimental structure of the same protein · chain A against z, TM-score 0.86
- 6C0F · Yeast nucleolar pre-60S ribosomal subunit (state 2) · an experimental structure of the same protein · chain A against z, TM-score 0.86
- 6CB1 · Yeast nucleolar pre-60S ribosomal subunit (state 3) · an experimental structure of the same protein · chain A against z, TM-score 0.86
- 6EM5 · State D architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against 4, TM-score 0.76
- 6EM5 · State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against 4, TM-score 0.76
- 6EM3 · State a architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against 4, TM-score 0.76
- 6EM4 · State B architectural model (NSA1-tap flag-YTM1) - visualizing the assembly pathway of… · an experimental structure of the same protein · chain A against 4, TM-score 0.76
- 7OHS · Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae · an experimental structure of the same protein · chain A against 4, TM-score 0.74
- 5Z3G · Cryo-EM structure of a nucleolar pre-60S ribosome (RPF1-tap) · an experimental structure of the same protein · chain A against X, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35178
- Elsewhere: UniProt P35178 · AlphaFold DB P35178
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