Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (Q72I32)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q72I32
- Type
- protein
- Length
- 315 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- DNA-directed RNA polymerase subunit alpha
- UniProt
- Q72I32
- Pockets
- 2 · best druggability 0.43
Structure
1 distinct chain · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit alpha | protein | 315 | 31% helix, 31% strand | Q72I32 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.43 | 0.80 | 20 | empty |
| 2 | 87 | 0.42 | 0.79 | 14 | empty |
Compared structures
- 6CUU · Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic… · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 6CUU · Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic… · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 5VOI · X-ray crystal structure of bacterial RNA polymerase and pyrG promoter complex · an experimental structure of the same protein · chain A against A, TM-score 0.70
- 5VOI · X-ray crystal structure of bacterial RNA polymerase and pyrg promoter complex · an experimental structure of the same protein · chain A against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72I32
- Elsewhere: UniProt Q72I32 · AlphaFold DB Q72I32
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