Research workbench
AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha 2 (Q2A4H7)
Analyse AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q2A4H7
- Type
- protein
- Length
- 317 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA2ED127c7DF83E1D9Fa8D7c517410A1D4A5B70F5
- Molecule
- DNA-directed RNA polymerase subunit alpha 2
- UniProt
- Q2A4H7
- Pockets
- 3 · best druggability 0.48
Structure
1 distinct chain · 30% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-directed RNA polymerase subunit alpha 2 | protein | 317 | 30% helix, 32% strand | Q2A4H7 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 219 | 0.48 | 0.74 | 27 | empty |
| 2 | 62 | 0.33 | 0.77 | 15 | empty |
| 3 | 59 | 0.31 | 0.76 | 19 | empty |
Compared structures
- 6WMP · F. tularensis RNAPS70-igla DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
- 6WMP · F. tularensis RNAPs70-iglA DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
- 6WMT · F. tularensis RNAPS70-(mgla-sspa)-ppgpp-pigr-igla DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
- 6WMT · F. tularensis RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
- 6WMR · F. tularensis RNAPS70-(mgla-sspa)-igla DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
- 6WMR · F. tularensis RNAPs70-(MglA-SspA)-iglA DNA complex · an experimental structure of the same protein · chain A against B, TM-score 0.67
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2A4H7
- Elsewhere: UniProt Q2A4H7 · AlphaFold DB Q2A4H7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.