MolNFT v1 · #168643 · protein + DNA
F. tularensis RNAPS70-(mgla-sspa)-ppgpp-pigr-igla DNA complex
6WMT: “F. tularensis RNAPS70-(mgla-sspa)-ppgpp-pigr-igla DNA complex”. Electron microscopy, 3 ligands (G4P, MG, ZN). MolNFT v1 #168643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WMT
- Type
- protein + DNA
- Length
- 4,003 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2A273, Q2A5E5, Q2A4H7, Q2A1M7, A0A0B6CT24, A0A5Q3U6R7, A0A0B3WH85
- Ligands
- G4P, MG, ZN
Structure
electron microscopy · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 69 | — | Q2A273 |
| A | — | protein | 223 | — | Q2A5E5 |
| B | — | protein | 230 | — | Q2A4H7 |
| C | — | protein | 1187 | — | Q2A1M7 |
| D | — | protein | 1159 | — | — |
| G | — | dna | 52 | — | — |
| H | — | dna | 42 | — | — |
| J | — | dna | 11 | — | — |
| K, L | — | protein | 73 | — | — |
| M | — | protein | 201 | — | A0A0B6CT24 |
| S | — | protein | 202 | — | A0A5Q3U6R7 |
| X | — | dna | 11 | — | — |
| Z | — | protein | 470 | — | A0A0B3WH85 |
Ligands and binding sites
- G4P · Guanosine-5',3'-tetraphosphate · ligand · 2 copies · chains E, D, M, S
- MG · Magnesium ion · metal · 2 copies · chains D, S
- ZN · Zinc ion · metal · 2 copies · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WMT · F. tularensis RNAPs70-(MglA-SspA)-ppGpp-PigR-iglA DNA complex · the same entry in another collection · chain Z against Z, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2A273
- Every structure of UniProt Q2A5E5
- Every structure of UniProt Q2A4H7
- Every structure of UniProt Q2A1M7
- Every structure of UniProt A0A0B6CT24
- Every structure of UniProt A0A5Q3U6R7
- Every structure of UniProt A0A0B3WH85
- Elsewhere: RCSB PDB 6WMT · PDBe 6WMT · UniProt Q2A273 · UniProt Q2A5E5 · UniProt Q2A4H7 · UniProt Q2A1M7 · UniProt A0A0B6CT24 · UniProt A0A5Q3U6R7 · UniProt A0A0B3WH85
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