AlphaFold monomer V2.0 prediction for 50S ribosomal protein L4 (P42921)

Structure

1 distinct chain · 35% helix, 14% strand (DSSP).

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Compared structures

• 8BUU · ARE-ABCF VmlR2 bound to a 70S ribosome · an experimental structure of the same protein · chain A against E, TM-score 0.98
• 8S1U · YlmH bound to stalled 50S subunits with RqcH and PtRNA · an experimental structure of the same protein · chain A against E, TM-score 0.98
• 6HA8 · Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome · an experimental structure of the same protein · chain A against E, TM-score 0.97
• 7OPE · Rqch dr variant bound to 50S-peptidyl-tRNA-rqcp rqc complex (rigid body refinement) · an experimental structure of the same protein · chain A against G, TM-score 0.97
• 7AS8 · Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with… · an experimental structure of the same protein · chain A against G, TM-score 0.97
• 7AS8 · Bacillus subtilis ribosome quality control complex state B. ribosomal 50S subunit with… · an experimental structure of the same protein · chain A against G, TM-score 0.97
• 6HA1 · Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide… · an experimental structure of the same protein · chain A against E, TM-score 0.97
• 6TPQ · RNase M5 bound to 50S ribosome with precursor 5S rRNA · an experimental structure of the same protein · chain A against Y, TM-score 0.96
• 6TNN · Mini-RNase III (mini-III) bound to 50S ribosome with precursor 23S rRNA · an experimental structure of the same protein · chain A against Y, TM-score 0.96
• 6TNN · Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA · an experimental structure of the same protein · chain A against Y, TM-score 0.96
• 6HTQ · Stringent response control by a bifunctional RelA enzyme in the presence and absence of… · an experimental structure of the same protein · chain A against E, TM-score 0.96
• 7AQD · Structure of the bacterial rqc complex (translocating state) · an experimental structure of the same protein · chain A against E, TM-score 0.96

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P42921
• Elsewhere: UniProt P42921 · AlphaFold DB P42921