Research workbench
AlphaFold monomer V2.0 prediction for ribosome-inactivating protein dianthin-30 (P24476)
Analyse AlphaFold monomer V2.0 prediction for ribosome-inactivating protein dianthin-30… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P24476
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x496CaF2B08cCa4D5Bf26e23EDc205f4D74D7bD6b
- Molecule
- Ribosome-inactivating protein dianthin-30
- UniProt
- P24476
- Pockets
- 2 · best druggability 0.49
Structure
1 distinct chain · 33% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome-inactivating protein dianthin-30 | protein | 293 | 33% helix, 20% strand | P24476 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.49 | 0.80 | 19 | empty |
| 2 | 53 | 0.32 | 0.77 | 12 | empty |
Compared structures
- 1RL0 · Crystal structure of a new ribosome-inactivating protein (rip): dianthin 30 · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1RL0 · Crystal structure of a new ribosome-inactivating protein (RIP): dianthin 30 · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LPD · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent… · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LPD · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent… · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LPC · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent… · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LPC · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent… · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LP8 · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1LP8 · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent · an experimental structure of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24476
- Elsewhere: UniProt P24476 · AlphaFold DB P24476
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