MolNFT v1 · #20641 · protein
Crystal structure of a new ribosome-inactivating protein (rip): dianthin 30
1RL0 · Antiviral protein dap-30: “Crystal structure of a new ribosome-inactivating protein (rip): dianthin 30”. X-ray diffraction, 2 pockets (best druggability 0.48). MolNFT v1 #20641 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1RL0
- Type
- protein
- Length
- 255 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Antiviral protein dap-30
- EC
- 3.2.2.22
- UniProt
- P24476
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Antiviral protein dap-30 (EC 3.2.2.22) | protein | 255 | 38% helix, 23% strand | P24476 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.48 | 0.79 | 18 | empty |
| 2 | 56 | 0.37 | 0.79 | 11 | empty |
Compared structures
- 1RL0 · Crystal structure of a new ribosome-inactivating protein (RIP): dianthin 30 · the same entry in another collection · chain A against A, TM-score 1.00
- P24476 · AlphaFold monomer V2.0 prediction for ribosome-inactivating protein dianthin-30 (P24476) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24476
- Elsewhere: RCSB PDB 1RL0 · PDBe 1RL0 · UniProt P24476
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