Research workbench
AlphaFold monomer V2.0 prediction for pyridoxine-5'-phosphate oxidase (Q9NVS9)
Analyse AlphaFold monomer V2.0 prediction for pyridoxine-5'-phosphate oxidase (Q9NVS9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9NVS9
- Type
- protein
- Length
- 261 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xcF79EabFD85CBBEc9F4c34c0156e5B2407B7C5fd
- Molecule
- Pyridoxine-5'-phosphate oxidase
- UniProt
- Q9NVS9
- Pockets
- 2 · best druggability 0.37
Structure
1 distinct chain · 25% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxine-5'-phosphate oxidase | protein | 261 | 25% helix, 27% strand | Q9NVS9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.37 | 0.75 | 15 | empty |
| 2 | 53 | 0.27 | 0.73 | 13 | empty |
Compared structures
- 1NRG · Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase · an experimental structure of the same protein · chain A against A, TM-score 0.80
- 1NRG · Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase · an experimental structure of the same protein · chain A against A, TM-score 0.80
- 8QYT · Human Pyridoxine-5'-phosphate oxidase in complex with PLP · an experimental structure of the same protein · chain A against A, TM-score 0.80
- 8QYW · Human Pyridoxine-5'-phosphate oxidase mutant R225H · an experimental structure of the same protein · chain A against A, TM-score 0.79
- 3HY8 · Crystal structure of human pyridoxine 5'-phosphate oxidase R229W mutant · an experimental structure of the same protein · chain A against A, TM-score 0.79
- 3HY8 · Crystal Structure of Human Pyridoxine 5'-Phosphate Oxidase R229W Mutant · an experimental structure of the same protein · chain A against A, TM-score 0.79
- 6H00 · Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant · an experimental structure of the same protein · chain A against A, TM-score 0.77
- 6H00 · Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant · an experimental structure of the same protein · chain A against A, TM-score 0.77
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NVS9
- Elsewhere: UniProt Q9NVS9 · AlphaFold DB Q9NVS9
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