MolNFT v1 · #150643 · protein
Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant
6H00: “Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant”. X-ray diffraction, 2 ligands (FMN, SO4). MolNFT v1 #150643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H00
- Type
- protein
- Length
- 204 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NVS9
- Ligands
- FMN, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 204 | — | Q9NVS9 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H00 · Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NVS9 · AlphaFold monomer V2.0 prediction for pyridoxine-5'-phosphate oxidase (Q9NVS9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NVS9
- Elsewhere: RCSB PDB 6H00 · PDBe 6H00 · UniProt Q9NVS9
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