UniProt Q9NVS9
Pyridoxine-5'-phosphate oxidase (Q9NVS9)
Pyridoxine-5'-phosphate oxidase (UniProt Q9NVS9), EC 1.4.3.5: 8 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 5 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q9NVS9
- Protein
- Pyridoxine-5'-phosphate oxidase
- EC
- 1.4.3.5
- Experimental structures
- 8
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 5 · 0 records with a druggable one
Structures
9 records of Q9NVS9 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1NRG | Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase | x-ray diffraction | A | PO4, FMN, PLP | 1 (best 0.34) |
| 1NRG | Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase | x-ray diffraction | A | — | — |
| 3HY8 | Crystal Structure of Human Pyridoxine 5'-Phosphate Oxidase R229W Mutant | x-ray diffraction | A | — | — |
| 3HY8 | Crystal structure of human pyridoxine 5'-phosphate oxidase R229W mutant | x-ray diffraction | A | — | — |
| 6H00 | Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant | x-ray diffraction | A | SO4, FMN | — |
| 6H00 | Crystal structure of human pyridoxine 5-phophate oxidase, R116Q variant | x-ray diffraction | A | SO4, FMN | — |
| 8QYT | Human Pyridoxine-5'-phosphate oxidase in complex with PLP | x-ray diffraction | A | FMN, PLP, NA | 1 (best 0.32) |
| 8QYW | Human Pyridoxine-5'-phosphate oxidase mutant R225H | x-ray diffraction | A | PO4, FMN | 1 (best 0.39) |
| Q9NVS9 | AlphaFold monomer V2.0 prediction for pyridoxine-5'-phosphate oxidase (Q9NVS9) | predicted | A | — | 2 (best 0.37) |
Ligands
Experiment against prediction
- 8QYT chain A against the predicted model Q9NVS9: TM-score 0.99, RMSD 0.47 Å
- 8QYW chain A against the predicted model Q9NVS9: TM-score 0.99, RMSD 0.55 Å
- 6H00 chain A against the predicted model Q9NVS9: TM-score 0.99, RMSD 0.62 Å
- 6H00 chain A against the predicted model Q9NVS9: TM-score 0.99, RMSD 0.62 Å
- 1NRG chain A against the predicted model Q9NVS9: TM-score 0.98, RMSD 1.12 Å
- 1NRG chain A against the predicted model Q9NVS9: TM-score 0.98, RMSD 1.12 Å
- 3HY8 chain A against the predicted model Q9NVS9: TM-score 0.97, RMSD 1.12 Å
- 3HY8 chain A against the predicted model Q9NVS9: TM-score 0.97, RMSD 1.12 Å
Elsewhere
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