Research workbench
AlphaFold monomer V2.0 prediction for protein NRD1 (P53617)
Analyse AlphaFold monomer V2.0 prediction for protein NRD1 (P53617) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53617
- Type
- protein
- Length
- 575 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x83521d6190CB56C500b18eCA10512992858dB9DC
- Molecule
- Protein NRD1
- UniProt
- P53617
- Pockets
- 5 · best druggability 0.72
Structure
1 distinct chain · 39% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein NRD1 | protein | 575 | 39% helix, 7% strand | P53617 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 806 | 0.72 | 0.77 | 71 | empty |
| 2 | 653 | 0.71 | 0.79 | 58 | empty |
| 3 | 65 | 0.37 | 0.78 | 9 | empty |
| 4 | 116 | 0.35 | 0.73 | 15 | empty |
| 5 | 65 | 0.31 | 0.74 | 14 | empty |
Compared structures
- 5O1T · Solution structure of the RNA binding domain of NRD1 · an experimental structure of the same protein · chain A against A, TM-score 0.30
- 5O1T · Solution structure of the RNA binding domain of Nrd1 · an experimental structure of the same protein · chain A against A, TM-score 0.30
- 5O1W · Structure of Nrd1 RNA binding domain · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5O1W · Structure of NRD1 RNA binding domain · an experimental structure of the same protein · chain A against A, TM-score 0.29
- 5O1Y · Structure of NRD1 RNA binding domain in complex with RNA (guaa) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O1Y · Structure of Nrd1 RNA binding domain in complex with RNA (GUAA) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O1Z · Structure of NRD1 RNA binding domain in complex with RNA (cguaaa) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O1Z · Structure of Nrd1 RNA binding domain in complex with RNA (CGUAAA) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O1X · Structure of NRD1 RNA binding domain · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O1X · Structure of Nrd1 RNA binding domain · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O20 · Structure of NRD1 RNA binding domain in complex with RNA (uuaguaaucc) · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 5O20 · Structure of Nrd1 RNA binding domain in complex with RNA (UUAGUAAUCC) · an experimental structure of the same protein · chain A against A, TM-score 0.28
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53617
- Elsewhere: UniProt P53617 · AlphaFold DB P53617
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