Research workbench
AlphaFold monomer V2.0 prediction for mannose-1-phosphate guanylyltransferase 1 (O22287)
Analyse AlphaFold monomer V2.0 prediction for mannose-1-phosphate guanylyltransferase 1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O22287
- Type
- protein
- Length
- 361 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0EA189b2343A464f560b44103f6A3396Da1dA8a9
- Molecule
- Mannose-1-phosphate guanylyltransferase 1
- UniProt
- O22287
- Pockets
- 2 · best druggability 0.56
Structure
1 distinct chain · 26% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mannose-1-phosphate guanylyltransferase 1 | protein | 361 | 26% helix, 33% strand | O22287 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 304 | 0.56 | 0.77 | 36 | empty |
| 2 | 116 | 0.40 | 0.75 | 16 | empty |
Compared structures
- 7X8K · Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (product-bound) · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7X8K · Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (product- bound) · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7X8J · Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded) · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 7X8J · Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded) · an experimental structure of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O22287
- Elsewhere: UniProt O22287 · AlphaFold DB O22287
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