UniProt Q9I7A8
PEPTIDE deformylase (Q9I7A8)
PEPTIDE deformylase (UniProt Q9I7A8), EC 3.5.1.88: 9 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 19 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9I7A8
- Protein
- PEPTIDE deformylase
- EC
- 3.5.1.88
- Experimental structures
- 9
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 19 · 4 records with a druggable one
Structures
10 records of Q9I7A8 in the MolNFT archive: 9 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1IX1 | Crystal Structure of P.aeruginosa Peptide deformylase Complexed with Antibiotic Actinonin | x-ray diffraction | A, B | ZN, BB2, MHA | 5 (best 0.52) |
| 1IX1 | Crystal structure of P.AERUGINOSA peptide deformylase complexed with antibiotic actinonin | x-ray diffraction | A, B | — | — |
| 1LRY | Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin | x-ray diffraction | A | ZN, BB2 | 1 (best 0.52) |
| 1LRY | Crystal structure of P. aeruginosa peptide deformylase complexed with antibiotic actinonin | x-ray diffraction | A | — | — |
| 1N5N | Crystal Structure of Peptide Deformylase from Pseudomonas aeruginosa | x-ray diffraction | A, B | ZN | 4 (best 0.48) |
| 1N5N | Crystal structure of peptide deformylase from pseudomonas aeruginosa | x-ray diffraction | A, B | — | — |
| 1S17 | Identification of Novel Potent Bicyclic Peptide Deformylase Inhibitors | x-ray diffraction | A, B | NI, GNR | 4 (best 0.51) |
| 1S17 | Identification of novel potent bicyclic peptide deformylase inhibitors | x-ray diffraction | A, B | — | — |
| 8S1X | Crystal structure of Actinonin-bound PDF1 and the computationally designed DBAct553_1 protein binder | x-ray diffraction | A | ZN, BB2, PO4, K | 5 (best 0.83) |
| Q9I7A8 | AlphaFold monomer V2.0 prediction for peptide deformylase (Q9I7A8) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 4 records
- BB2 · Actinonin · in 3 records
- GNR · 2-(3,4-dihydro-3-oxo-2H-benzo[b][1,4]thiazin-2-yl)-N-hydroxyacetamide · in 1 record
- K · Potassium ion · in 1 record
- MHA · (carbamoylmethyl-carboxymethyl-amino)-acetic acid · in 1 record
- NI · Nickel (II) ion · in 1 record
- PO4 · Phosphate ion · in 1 record
Experiment against prediction
- 1N5N chain A against the predicted model Q9I7A8: TM-score 1.00, RMSD 0.24 Å
- 1N5N chain A against the predicted model Q9I7A8: TM-score 1.00, RMSD 0.24 Å
- 1S17 chain A against the predicted model Q9I7A8: TM-score 1.00, RMSD 0.28 Å
- 1S17 chain A against the predicted model Q9I7A8: TM-score 1.00, RMSD 0.28 Å
- 1S17 chain B against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.36 Å
- 1S17 chain B against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.36 Å
- 1N5N chain B against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.47 Å
- 1N5N chain B against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.47 Å
- 1LRY chain A against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.47 Å
- 1LRY chain A against the predicted model Q9I7A8: TM-score 0.99, RMSD 0.47 Å
Elsewhere
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