MolNFT v1 · #15466 · protein
Crystal structure of peptide deformylase from pseudomonas aeruginosa
1N5N: “Crystal structure of peptide deformylase from pseudomonas aeruginosa”. X-ray diffraction, 1 ligand (ZN), 4 pockets (best druggability 0.48). MolNFT v1 #15466 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1N5N
- Type
- protein
- Length
- 331 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase
- EC
- 3.5.1.88
- UniProt
- Q9I7A8
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase (EC 3.5.1.88) | protein | 167 | 35% helix, 28% strand | Q9I7A8 |
| B | Peptide deformylase (EC 3.5.1.88) | protein | 164 | 35% helix, 26% strand | Q9I7A8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.48 | 0.80 | 19 | GOL |
| 2 | 122 | 0.47 | 0.79 | 22 | GOL |
| 3 | 63 | 0.29 | 0.75 | 16 | empty |
| 4 | 58 | 0.28 | 0.74 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 376 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I7A8
- Elsewhere: RCSB PDB 1N5N · PDBe 1N5N · UniProt Q9I7A8
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