MolNFT v1 · #13913 · protein
Crystal structure of P. aeruginosa peptide deformylase complexed with antibiotic actinonin
1LRY: “Crystal structure of P. aeruginosa peptide deformylase complexed with antibiotic actinonin”. X-ray diffraction, 2 ligands (BB2, ZN), 1 pocket (best druggability 0.52). MolNFT v1 #13913 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1LRY
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide deformylase
- EC
- 3.5.1.88
- UniProt
- Q9I7A8
- Ligands
- BB2, ZN
- Pockets
- 1 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide deformylase (EC 3.5.1.88) | protein | 165 | 35% helix, 30% strand | Q9I7A8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.52 | 0.81 | 22 | BB2 |
Compared structures
- 1LRY · Crystal Structure of P. aeruginosa Peptide Deformylase Complexed with Antibiotic Actinonin · the same entry in another collection · chain A against A, TM-score 1.00
- Q9I7A8 · AlphaFold monomer V2.0 prediction for peptide deformylase (Q9I7A8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I7A8
- Elsewhere: RCSB PDB 1LRY · PDBe 1LRY · UniProt Q9I7A8
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