UniProt Q8DIV4
Photosystem II protein D1 3 (Q8DIV4)
Photosystem II protein D1 3 (UniProt Q8DIV4), EC 1.10.3.9: 3 experimental structures and 1 predicted model on GenesisL1, 13 ligands bound, 15 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q8DIV4
- Protein
- Photosystem II protein D1 3
- EC
- 1.10.3.9
- Experimental structures
- 3
- Predicted models
- 1
- Ligands
- 13
- Pockets
- 15 · 2 records with a druggable one
Structures
4 records of Q8DIV4 in the MolNFT archive: 3 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5OJR | YCF48 bound to D1 peptide | x-ray diffraction | E, F | — | — |
| 5OJR | YCF48 bound to D1 peptide | x-ray diffraction | E, F | — | — |
| 7YQ7 | Crystal structure of photosystem II expressing psbA3 gene only | x-ray diffraction | A, a | OEX, FE2, CL, CLA, PHO, BCR | 11 (best 0.83) |
| Q8DIV4 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 3 (Q8DIV4) | predicted | A | — | 4 (best 0.63) |
Ligands
- BCR · Beta-carotene · in 1 record
- BCT · Bicarbonate ion · in 1 record
- CL · Chloride ion · in 1 record
- CLA · Chlorophyll A · in 1 record
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 1 record
- FE2 · Fe (II) ion · in 1 record
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 1 record
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 1 record
- OEX · Ca-MN4-O5 cluster · in 1 record
- PHO · Pheophytin A · in 1 record
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 1 record
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 1 record
- UNL · Unknown ligand · in 1 record
Experiment against prediction
- 7YQ7 chain A against the predicted model Q8DIV4: TM-score 1.00, RMSD 0.36 Å
- 7YQ7 chain a against the predicted model Q8DIV4: TM-score 0.97, RMSD 0.81 Å
- 5OJR chain F against the predicted model Q8DIV4: TM-score 0.22, RMSD 1.82 Å
- 5OJR chain F against the predicted model Q8DIV4: TM-score 0.22, RMSD 1.82 Å
- 5OJR chain E against the predicted model Q8DIV4: TM-score 0.21, RMSD 1.43 Å
- 5OJR chain E against the predicted model Q8DIV4: TM-score 0.21, RMSD 1.43 Å
Elsewhere
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